Scaffold Ga0183755_1000816

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1000816
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18255
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (32.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014805	Metagenome / Metatranscriptome	260	Y
F021015	Metagenome / Metatranscriptome	221	N
F061257	Metagenome	132	N
F089413	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100081622	F014805	AGGAG	MGLYKEITTEAGSTLSYWDYGIVEVNTSASTAADQSANVNIWGYHDVDYYNNDAPPIERWNSYSCGMVSGTDHYPYMDLTGVSGVVTGTKRLGPDLPDGWSWTENSVSGWMASSSDIRNGAQAWALVCIPAFSGAIVTGQVYPD
Ga0183755_100081623	F021015	N/A	MGLNLNYTKPDGQAANYWKISRVEDWFQGTDPESAQYMANVNTLGFTSEAYRNAGAPSVDGNMYNCTYASGTDFYPYHDLTGVSGEVTGSEREVPLPDGWDPLENGVSGWMQRSDDIRSGAYTWLKVCVPFFSGATDALTEGE
Ga0183755_100081631	F061257	N/A	MREMKYESDILTNNWEEFFNEVAAKCAYYELGFDDINPEKEYEIVRECFVEKYTVQHTVDAWHEYVVEEMVDSQ
Ga0183755_100081636	F089413	N/A	MRETTQAHIIKQSDDVANIRGSLQILAADTLVSKEIIQERIATAEKKLSEIQNKLMEIGFSESLEWIKDEEGAEA