Scaffold Ga0183755_1000729

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1000729
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19316
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (54.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020902	Metagenome / Metatranscriptome	221	Y
F022423	Metagenome / Metatranscriptome	214	Y
F039873	Metagenome	163	N
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100072910	F039873	N/A	MNDIAQIREQAFIRAGNVCEWANCEDNKWLELAHIKDIGMGGNKNRKYNLDNTAVLCKWHHDIYDGRQRMGTKVAYRELLQGYLNRWSNVT
Ga0183755_100072918	F022423	N/A	MQDINFISQTVQSMTESVTHTETLHKIIGTANQYAMTMKFPLDKTQWTDEQLNRYFSMIEKLVKMPVEYTQADFDSMSIEEKLEAAGIQAEEITEGVQQAGDMVGGIVNKMEQQNKYRDDLKCPCPNQLMVWDNRRNKKSDKSPDFVCSGKSPMDCPMHTGKWRKSWWLDNTDVPQEWNLDGEQTTA
Ga0183755_100072920	F040134	AGG	MLNIDTKSNYYIQSIEYSGLGDIPHFILVNKEGDFKLVPVEIGIHNLRKLLGLE
Ga0183755_100072933	F020902	AGGTGG	MQDEYDVAFWDMMYDEFGMQDELDVLSESVENIIYPVEGIIIFITKDFYNDQR