Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000588 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000588 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21687
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (76.74%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

21687

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (76.74%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031151	Metagenome	183	Y
F042374	Metagenome	158	Y
F059457	Metagenome	134	Y
F065673	Metagenome / Metatranscriptome	127	Y
F091013	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100058810	F031151	N/A	MIKHFEKFNDCGKGLLPLSFSHLNEFAFYRERWALRRIFGYQFPSGASAERGSSVESGLNMVLNGMSVKEASEKMIAEYDANCLRITDPKIDDERANLVPLLELGASTFQQYAFRWDLLNYQKKVELEINGIPFIGYTDFHFEDKNTKEDFFIDLKTSKNLPLQISISHAMQQAIYQRATNTKQILWYLKTPTKTKGAEYRAMTLDDYSRPMKICEHILKVMANYLKKVNNADDVRDSLIPNPDNWIWKEENVLKARKEVWGY
Ga0183755_100058811	F065673	AGGAG	MSDKLITDEDIADIDRVKEQAIAKHMSDIKVMSKLVLSLNEYIIRFGRTSNIHDQCFDLKAQVIKNRDHLQDWVNQI
Ga0183755_100058814	F091013	N/A	MIKNEIPLNKYVIHCKETKYYNVNISAKSYEDAETKWQSIAKKRDYITLHKELEVISVSWEGVNKND
Ga0183755_100058817	F042374	GGAG	MKQSIIIKSFLILSILGAVSSCSTMPIVDSRGKSSANIKGDMNRFHDDYYTCKSLVEDQTNTGWEIGKNIYNNLRWKVLWLSPKLNTRKDFINRCLEGRGYNVINK
Ga0183755_100058818	F059457	GGAG	MIEEPKKIGNTELYTVRVLNMSVAKYYGVTKEYTEIVVQARELNKKELAKNKEKAELNLYYGVRYLLNKLVLRKLEDELDKEIEKLKGVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000588

Overview

Ecosystem & Geography

Associated Families

Sequences