Scaffold Ga0183755_1000556

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1000556
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22453
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003361	Metagenome / Metatranscriptome	492	Y
F006940	Metagenome / Metatranscriptome	361	Y
F006971	Metagenome / Metatranscriptome	361	Y
F022417	Metagenome / Metatranscriptome	214	N
F027815	Metagenome	193	Y
F028777	Metagenome / Metatranscriptome	190	Y
F050395	Metagenome / Metatranscriptome	145	Y
F081225	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10005561	F081225	N/A	MMVGFIGTVVSIVGVDMVNANNRRDFKAEEYDLYDVRKARPFWSQVCKANEWQVIKDEEDFAEDYVCKIYNNLYVMELQVVGYWHNFDIQYISNLFISASKVDNLKKKAQEKNTKAGLIFLNCVPNRFIGIDVERIIESYKVTTSSGEKSYKIPIQHIHFLYKELLGTNFCDCLENHIEIMKKSHGRIPMAQRKENWRGINGICC
Ga0183755_100055615	F003361	N/A	MKLTLNGALDLSRSINSQTIWNKRSTDYFNELAKELKQDSLNALSNNPSPRSQAGRGNKNTGATRRSVFTAKLGNTNRLRMSEGFKLATDKQYAPFIHGKPIYRGFSPVKKTRPFFPPYQEGSSLAKWAKRGQPKMNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIARDIARSVR
Ga0183755_100055620	F006940	GAGG	MKRLSMDDISNAPSLPEKEIEIPEWDATVLVTGLTKADAVEINELSEKDGIKDEVLFEKHLLLKGLKDPQLDDLEQVEEFYSKATPSIVDKVLIGIYRCMAWTKEDQASIASEFPE
Ga0183755_100055635	F050395	AGGA	MYPLKRKNKFNWAYKFLYWNGEENIVHLYTIETKEGFQVAESAAWGNATFDGCNNMKYIGKNKMEVENGTNA
Ga0183755_100055636	F022417	GGAGG	MAQMPKFLEDYTTVDELINKMNTEYPECRLIAEMIGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDAAPEKSNLDKKVEALEAEGLVTDISQKAQAVMNSIKDFAMDCTAQDLDKARLYTASALTELGIRKEDVSITNLQAVKDKIQDIANSEKSA
Ga0183755_100055637	F028777	GAG	MLGLFARNKHSFTEMLFLEKDISEFRKIRYILEVEGRICSLDPEFSTSGNLRKAVHRLNRDYNSKIYKDECNCNFKVKGKLNMDGTPRKH
Ga0183755_10005564	F006971	GGA	MIYQKIEYKKHQKVKFVIPTDLRIIDPQTKKILWKYGTIQLFANNKISAWVLENNTKEPIRISLFCILPVH
Ga0183755_10005566	F027815	GGA	VDSIDKDFILDDNMFSDNPVFVDISQEFEDDCGDACKI