Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000471 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000471 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24826
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (75.93%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

24826

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (75.93%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016167	Metagenome / Metatranscriptome	249	Y
F023955	Metagenome	208	Y
F054356	Metagenome / Metatranscriptome	140	N
F064099	Metagenome / Metatranscriptome	129	N
F081757	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100047114	F016167	AGGA	MARMSERQREYFLSRVNDEIHNHKRSLELKESSAKEKMIKKLYPKYVEQVGLKKELAELQTLETKYNKLLNHMRSTISRMFEAEDNIYMHTNNDSYANVVSNLTRLANKTLDREFVKSPEGKAILQLDQAHQRAKDIIWSAGSDSNIMQVVSNVLSKDAGISLDYNPLQIESK
Ga0183755_100047116	F054356	AGGAG	MTFNLNNFINFMDQVKDKDWVDDHVIIDGVNPKFQKEIKDKIRERLKDDTPKRSKT
Ga0183755_100047124	F023955	AGGA	MKVEHNIKIVRQDGDIEYHDVEGEWNEEGSGGPSFKPLYELLNCKMLEVTYGMNLQDTEELPIFLDEEGLYKENNQINGYATAMQKRWCDATGRMQISPIVGDVAIDLGLTVESLEEVSIELELQDYERQSNTTQA
Ga0183755_100047128	F064099	N/A	MSNMYRLIIIILLVYIIWVNHKYVQVGWCESEIDVLRNTIAEIHTILKQ
Ga0183755_100047129	F081757	GGAGG	MIRIIKYIVSTYVIVCTVVMTLLLSTLVVEADHGAEHGPGWHSNNCDQQPWQDDQGVVCNMMGLESKILEHHGYKIWEFDDSYIIMYKDQEILQWDCILDSTTTDANRFFCAVMMDYDYDRLESFIYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000471

Overview

Ecosystem & Geography

Associated Families

Sequences