Scaffold Ga0183755_1000456

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1000456
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25147
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004988	Metagenome / Metatranscriptome	416	Y
F021188	Metagenome	220	N
F046006	Metagenome	152	N
F074037	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100045620	F074037	GAGG	LGRHKIMEPSKQQKGIRAELLAAVDFLGEPNTHVYYDLGGKGPVDLIVVNSATGTVDLYDVKMKSYRMQKGKMTMINRTKNKSAKNLDVKVLYI
Ga0183755_100045623	F004988	N/A	VPKLVETICPRCDGNGYIRILPVVAGVFDKTTEMDCPMCEEEFMHMGMKVTTHNGYVMLPIEQTRLNIEGGRESKIKWSRETLPEVGK
Ga0183755_100045624	F046006	GGAG	VKEYLTPLGKYTNLVLLLLILHFCITVMVVNFRYIDKLNTTIETMWHEIEQVKETNISLFQFIEEHGDDITGR
Ga0183755_100045627	F021188	N/A	MDTEELEILWIPEGETKHVFVESTPDGDNIPVDLPASTVDRLCKKKFGHTNWARMGAVMPEELHHNPHEIDYLEGIVYFKNPRMV