Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000425 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000425 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25876
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (41.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

25876

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (41.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011846	Metagenome / Metatranscriptome	286	Y
F019754	Metagenome	228	Y
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F075429	Metagenome	119	N
F087900	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100042511	F087900	AGGAG	VQQKISFYYCQVKDEDNHFPLAIARFTAYDQDHRPLSVEQVTYESDSNYFQWQVSAALSCGVDVSVITASPMEDFAWINKLSKYA
Ga0183755_100042514	F011846	N/A	VKLSAGFIESLEKENDGSSSKDNYLGYTKLEQGKPANFALLEQDPLEYWLVWAEAKASGSMKPFRFMNQPSSDEIDLELGSEYVQSMNYDKTAIRKPQQCLTWPVYNWDMNKVQVLEVSHISLARQFAKYGLNKKYSKNLLDWDFELSKIKADMVRYELLIVPRDEDEHNETQMEKAWLQVQKGGFDLNRMVTGEDPFSEG
Ga0183755_100042516	F075429	GAG	MTGTTELPETVTEFLEDGSVAVIVGHLRGWVSSAHLVEPKANQLMRQWLNEKSEALLNEDHDGDS
Ga0183755_100042521	F022313	N/A	MTYHYQPQQEYESTKLERVLKELQAIVKRDGKRNLMDQQLSHSMQELLQYEVIPLLEAELNYDPTPQY
Ga0183755_100042522	F023484	N/A	MNINTKAGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVIDADQVAKCKTFIRNHS
Ga0183755_100042523	F020110	AGG	MSTQLEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDIQAAQAEIELSDDGPSLEEASEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYRTQSASPFA
Ga0183755_100042525	F019754	AGGA	MNNTDDFMLPSELEPAWPPSDDDIEAMELDAYDRQKLDDLIAEELWLETLPSVPTPAELNPNLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000425

Overview

Ecosystem & Geography

Associated Families

Sequences