Scaffold Ga0183755_1000289

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1000289
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30187
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016126	Metagenome	249	Y
F076028	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100028914	F076028	AGGA	MLMIAKTKLVFDNSWLSKLTFKPHDDYDLAGNVDAVAIKSVDGNAHSFYRRKSIEYPEDFTYTKYYNLCKSLIDFFEFETTRIRVHKQEPGQIIPIHTDDNNINAKTNDDFRLRAVTALTGNDDFIYQFQLNNEIEQFSLKTGETVIFDPDLVGHGMVNQSLDKTRYSLVQVFKAYPVSNWLKNFINTDKIEII
Ga0183755_100028929	F016126	N/A	VDITYFNWYELVSKARKDQAAILVLAFAQTSLYNARTTKGLMRALNINHIPMFLFTAGLLEQKKDKLVCKYKTEEPMSYLKNPWFFTHNVDTQTKLEYLHMLSMRRISEAQDYIAKNYIRKELQSPYLEIKGDKIYFLPESSESRKSYT