Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000279 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000279 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30534
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (71.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30534

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (71.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F007945	Metagenome	342	Y
F031151	Metagenome	183	Y
F057428	Metagenome / Metatranscriptome	136	Y
F059457	Metagenome	134	Y
F089161	Metagenome	109	N
F091013	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100027911	F057428	GGAG	MAKNVTMKKGETIIKCSEDHIEHFKKNGFTLGNEKAVVKKTEKIKETNEAKEEL
Ga0183755_100027939	F059457	AGGAG	MNKLPKIGNTELYTARVLNMSVAQYYGVVKEYNELVVETRELNKKELAKNGDKAELNLYYSVRYNLNKLVLEKINGENNE
Ga0183755_100027943	F091013	GAG	MTIKNEINLSSFVIHCKETKYYNVDIKARNYEEAEKRWKNIAKRRDYLTLHNEIEVISITEE
Ga0183755_100027945	F005751	N/A	MSDIYSIEFDPHKVSHQFEELGMIFADLDTAVELMKKEEKMIIAELTVYYSMKGGYKNMTELNGLIYSNTKFKDYFDRYERTLKQRNQSKIRFESFKAFRDDLRTKVVNERELAKHL
Ga0183755_100027947	F089161	AGG	MMADKYNLEEELNQTELDQDKEKETAIYKHLADIGVMDKLVFALNEYIIKFGRTSNVHDQCFDLKLQVLANKKHLQDWVDKI
Ga0183755_100027948	F031151	GGTGG	MREHFEKFNVSGKGLLPLSFSHLNEFAFYRERWALKRIFGYEFPSSAPAERGKAVESGINMILNGISFSEASEKMIAEFDDNCSRISDPKVDDERANLIPLLELGASKFKEHAYSWELLGYQKKVEVLINEIPFIGYTDFHFEDKKTKEDFFIDLKTSKTNPSQMSTSHAMQQSIYFKATNSRQMLWYLKTPTKTKAPEFTQLELASYNHYVKICEHIVNVMGNYLKTVNSPDDVRDSLIPNPDNWIWKEQTVLNARKEVWGY
Ga0183755_100027950	F007945	GGAG	MMSLIKGHTTVFQCIGDAYRQKDIQRFYYGYQLCIRAKTNMKNLHKYLDNRYNFKRSECFKMLKEARGLQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000279

Overview

Ecosystem & Geography

Associated Families

Sequences