Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000208 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000208 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33665
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (78.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33665

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (78.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F013531	Metagenome / Metatranscriptome	270	Y
F019114	Metagenome	231	Y
F048285	Metagenome	148	N
F091841	Metagenome	107	Y
F097272	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100020810	F004603	AGGA	MIFSININGSIVDWCYTINNQEKQYHQTWIPKIRDIQIITKELNGLTVSEVRKLILEDIQPDIQMVRDNTNKKARARRQKNV
Ga0183755_100020812	F048285	N/A	MKIDPIQLEQATAFILETNKYIYEQAKELATQHLETEDNKNFKARVKRYEPESKETLLHFADEVTAWAECEKNYPLMDFIDKFFKTKKGY
Ga0183755_100020816	F019114	GGAGG	MKQLRDRMMSVRDQYYKSRRKRGFTAFWFSSPLHTILVLEVAIADASSKSINFEAIVKLLPSSMGSRSTVATVLEDFVARGYMCKKVGKDKRKRDYIMCPGAMKLLNEWFVERQRSLKAV
Ga0183755_100020820	F097272	GGAGG	MDLTEFGLDKIEAGESSGGGDRVKPGRYNFEYAGSEMIEGKNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLVKMLNAMGVASMKNSDELLGKKVEGELVVGEKGYLEVKDDFGNGWKAYGTTATKENVDPKDVLPKEDKEEMFPSDVEDEDDLPF
Ga0183755_100020823	F013531	GGAGG	MVNEKKKEQPLLSFQDKDGNPREIFERDLTDATAPLVEEISRDLGAEKQLMEAYELATKTVHHMEAVRKNITNTLEKLEKELPPYKKPIKIEGVTKEIN
Ga0183755_10002085	F091841	AGGAGG	MEEYKIIDWAYNRMFPNKTFKSFDDGIAFVHERFNQDELDEIFVVPSNTKCYANGYWSTM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000208

Overview

Ecosystem & Geography

Associated Families

Sequences