Scaffold Ga0183755_1000162

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1000162
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36849
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009988	Metagenome / Metatranscriptome	310	Y
F013025	Metagenome / Metatranscriptome	275	Y
F051551	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100016251	F009988	AGGAG	MEWMNWSNFAYLMVIILGAVGTMVATKYRIILKEMKDVARTYHEAKKDGKITKEEQQKLAKECMDVMMAAVKLVWKF
Ga0183755_100016252	F013025	N/A	MKLNTNISVENIIAIATIICSVVLTFGFMQYDIDIMRKELELKADKREIIADRNLITYKLDIIMKDIEEIKQTLKENK
Ga0183755_100016260	F051551	N/A	IQSGKETLRKNNGDDGDSSKALLKFACDNDTDNDPSVFSSYTKMSHAQIMTELAKSEWTTEIE