Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000134 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000134 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39224
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (65.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

39224

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (65.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003679	Metagenome / Metatranscriptome	474	Y
F014069	Metagenome / Metatranscriptome	266	N
F037258	Metagenome	168	Y
F038858	Metagenome / Metatranscriptome	165	Y
F045155	Metagenome	153	Y
F045370	Metagenome / Metatranscriptome	153	N
F097476	Metagenome / Metatranscriptome	104	Y
F105930	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100013420	F045370	N/A	MTNRIFPFSSGTNVNGNWKNKAAQRIKSSKKFFKKKVIPSATKNYKSYVAPTVGMFRSAAGLATGVGKLILRHPVLATTAYIASKGFRPKGKFAKGRKFNEFGDAGKVLSKGGKRFI
Ga0183755_100013431	F003679	GAG	MFKVILKNKFRERKIDLSVAVKVMYKQQFTGSIQQEHIKWWKPYWIKPIMLKILYPKQGWITLVKVFREGKPSVRVITRPISSDKRELLVLKHNYGKED
Ga0183755_100013434	F038858	GGAGG	MKRIEKVGEVLIRTFTLPIRICVGVYKCIEKATPDTLEMPFEIKRKEETDGRTNQESSN
Ga0183755_100013435	F014069	AGGAGG	MEEQIKKAPINERVKTKVIPLTKWFAEQYFQTVELMHSDPRFKNLPSYNQTSCIATVIIATNSALDKSRDARNKAEVLKDISDTAEIKKAV
Ga0183755_100013439	F097476	AGGA	MDLKKINEQLKPKLVGPYNPSRRYGVMGLSLGSDLHDRLKNYAVKNNVKMAQIIKLLVKSYLDEMENK
Ga0183755_100013453	F105930	AGGAGG	MKKYKVTVPEQELIVEAEDEDDAESQALCLWDWGNIDMEVEEDNKQ
Ga0183755_100013454	F045155	AGGA	MDYLQFKVELEMMGINTFENDVLVLKLYKLYLRKDKNDYRKAIGRFLKIPIGN
Ga0183755_100013457	F037258	N/A	MKSPELKLFRSIITQAIEDAMYDGLNKYKIIDKREAISWLVSHSNDFKIICHYADIDSQYASVKFAKAMKLDIYTLTDMQHKVIQNKTDRPHKEKNYRLTFND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000134

Overview

Ecosystem & Geography

Associated Families

Sequences