Scaffold Ga0183755

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1000126 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029448 Open in IMG/M

Scaffold ID

Ga0183755_1000126 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39735
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	60 (89.55%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

39735

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

60 (89.55%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_023

Coordinates

Lat. (^o)

42.1735

Long. (^o)

17.7252

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026281	Metagenome / Metatranscriptome	198	Y
F047993	Metagenome	149	N
F057283	Metagenome / Metatranscriptome	136	N
F063646	Metagenome	129	N
F082524	Metagenome	113	N
F085634	Metagenome / Metatranscriptome	111	Y
F103162	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100012617	F103162	GAG	MGETKTGKELTPQKLTPVKGDIRFVNTDCSLNECIDKFDSVIQIVEKTAKGNSYYAYYHVCKDCERKHMSSRNKTDTAESKRRADLGYKEV
Ga0183755_100012623	F085634	GAGG	MPVYTIRNDMTEEIMDVNMSYKDFQDFLHGNPEYSHIFKMPATVSGRMSTHRMAGEGWQDVLKKVKKGSGKDAKINV
Ga0183755_100012628	F047993	AGGAG	MLFLGLGAVGFTLTAIIGGWVIYDQFFKDVEEDTTESEVPTIAYYSEAEWLEEPQATVKYLVEDDEGIDADLTLTSVMDWVKADEPNIWTGDWKVKVSTWNDAGVVQITGDASTLIEERYDDVVVPYFTGDGFLEQATIDLDFA
Ga0183755_100012645	F057283	AGG	MATNAERMDRIESKIDKLSEVLVQMARVEERLVNQEEDHKILRKDIYNLYDKVSEMEKVVQKNQITVNIINRISWIIITGVVGGFGTVITYLFNK
Ga0183755_100012650	F026281	GAGG	MKYLISAIMATVVAAPAIAQETTSEESSLLASNASVSVSTDLEGNADWKLGAELGIAGFGVDAGFTLKDRGEADADDYKISLGTGMDLGFASLDTSVNYAWGATSGADLIGRGDGNTWGDVTVTPELAVTPGIIGGEYVWVGAEMDLASAGEIDLGWGGANYGFGYKHELNDRASVFAEYGWSVDVVDDDDDATVNDWTTTADGLKVGVGFKF
Ga0183755_100012657	F063646	AGGAG	MMHFIVEHCLSHNDKWLEVKTLSTLSEAEEYLIDHFDKTAEALDESDAGDMSVEILMKSLKKNYRITEMEVV
Ga0183755_100012660	F082524	GGA	MSKILISEYWIQDNGGMVRVYKNGSGYELIAEEDDGTVFLESKNIPTLEKAENRAEEIALLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183755_1000126

Overview

Ecosystem & Geography

Associated Families

Sequences