NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0239579_1016401

Scaffold Ga0239579_1016401


Overview

Basic Information
Taxon OID3300029442 Open in IMG/M
Scaffold IDGa0239579_1016401 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Alinen Mustajarvi, Finland - AM13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUppsala University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1349
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland

Source Dataset Sampling Location
Location NameFinland: Alinen Mustajarvi in Hameenlinna
CoordinatesLat. (o)61.208142Long. (o)25.113609Alt. (m)Depth (m)6.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049375Metagenome146Y
F076791Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0239579_10164011F049375N/AMLSILIDDQPLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNMSILGWKNRLASTRSIYETFDGSIRWNGIVLFVGQIKIKTASDKTFEGTLYINKGNFNYEVKDLLLNRVDMGMKTFPTDQDAVNYFNWSLTHFYPEVDFSLPEIANLDFFDPVATNPELMAYNHIFPDGWLHKTTTDGQNRTILIPFLYLKFVLNKLAENFGYRLQDEFFISSIELSRLVIYHSVNLSEVIFGLQQIYYCRFLPKVKVSEFISGLEKWFNCCFHVDSKQRVVRIVSNKEVLLRSEVVEFSKNVLSISQEIPEQITGFRFLLGPDSGDKVYQAQLDSEKGITDYIK
Ga0239579_10164012F076791N/ATLISETGQEIVIDPKTTKNLMVNYPQVIDAINFARVPQRAVGRYMDSPASTPVGVPGEVDPEFIASINKLNSLIESGIPAFISFDHLRETTNRINEIEAEVSK
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