Scaffold Ga0243191_100093

Overview

Basic Information

• Taxon OID: 3300029403
• Scaffold ID: Ga0243191_100093
• Source Dataset Name: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-30_Run1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Zhejiang University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112501
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (91.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location

• Location Name: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051934	Metagenome	143	N
F077319	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243191_1000931	F051934	N/A	MGLMRRLAAAALAAVLLLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWTGIRQAIADLTAQENDGRLENTALITCAEEIARLSEEDRALYYYIEAFGLESGADANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYAEADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPASYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY
Ga0243191_10009338	F077319	AGGAGG	MLIRNATLQMSATERTCMDVRVMNGCVWEMGAALVKGLYESETDLRGDVLMPGRMLETPVPAADEKALRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD