NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243998_1000401

Scaffold Ga0243998_1000401


Overview

Basic Information
Taxon OID3300029388 Open in IMG/M
Scaffold IDGa0243998_1000401 Open in IMG/M
Source Dataset NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 096_4_29_stool_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50017
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (87.04%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097172Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0243998_100040122F097172AGGAGGMKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNKYPIDKDKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLAAYSFDMNIEYRK
Ga0243998_100040124F097172AGGAGGMKKNVLKKLMCAVLAAASVATAVVPAMADDVVTAEAATKKVISAYRYHLEGSDKNGYPVNGFSKAAFYKDLNSLPAVKTGKTTVNVPAVTSSIKSVSKEKDNPRYESFVKFKAPKTGKYVVTINNLQGTDDKSLRCMMYYGFYQATKMGKKYRIDIIGSDTVGKYDTLCENNYLARLRTILDNYKAEHPEYADVIEETYEYQKDLVNKYPVDKIKFTTQLKKGQTYVFVIDNRGMDKAVPPYFTTHGSDEQSCLWGGNYLAAYSFDMNIEYRK

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