Scaffold Ga0238435_110238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0238435_110238

Scaffold Ga0238435_110238

Overview

Basic Information
Taxon OID	3300029349 Open in IMG/M
Scaffold ID	Ga0238435_110238 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	865
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location
Location Name	USA: Iron Gate Dam, Klamath Basin, California
Coordinates	Lat. (^o)	41.93	Long. (^o)	-122.44	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033727	Metagenome	176	Y
F056429	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_1102381	F033727	AGG	MREQAKVLSEANEVTRSMVKQYLQKHELSLNAFSKLVEIRQPNLHKFMSGSNLSSKSIERLGEFFSK
Ga0238435_1102384	F056429	N/A	DLKVMGYYKNTTREQVVQIKDFKKDKVWYETIRQYETNPITEFCCSIERFKRLYIKTK

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