Scaffold Ga0238435_101267

Overview

Basic Information

• Taxon OID: 3300029349
• Scaffold ID: Ga0238435_101267
• Source Dataset Name: Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4806
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location

• Location Name: USA: Iron Gate Dam, Klamath Basin, California
• Coordinates
  • Lat. (^o): 41.93
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015583	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_1012672	F015583	AGGA	MKFLSIVAALLCTTAIAQDVIVAPRRSIVITAQDHATIIASRGTLVHSSCGQCEGIGSGSTPEAARRNCCFFGKRQIVEEGVAYSPARRQWFAVIRYR