Scaffold Ga0238435_100456

Overview

Basic Information

• Taxon OID: 3300029349
• Scaffold ID: Ga0238435_100456
• Source Dataset Name: Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9576
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location

• Location Name: USA: Iron Gate Dam, Klamath Basin, California
• Coordinates
  • Lat. (^o): 41.93
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F002071	Metagenome / Metatranscriptome	596	Y
F002245	Metagenome / Metatranscriptome	578	Y
F009143	Metagenome / Metatranscriptome	322	Y
F038205	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_10045613	F002245	AGG	MSNIMKVPHTIVFEALIDLDKIPANLLPRLIALDENAIKEMCKGATLAALNESNTLKVANENNTWAEITIKEGN
Ga0238435_10045615	F002071	AGGAG	MEIGQTYTTTTSGVTGVIKAVDNHPSGVNRILLDVNGKERWTSAPAN
Ga0238435_10045621	F000311	GGA	MYFELTAPNQVAFKRAIWEADITGLDPQEMDSLTFNIGTGSIEKVSRIRDKYNLKESYVSEYETTGY
Ga0238435_10045624	F000450	GGCGG	MGDRANFGFVQSNGETIVLYGHWAGYNMLGKLADAVIKARPRWNDESYATRIVISQLIGDQWNMETGWGLSVNNILDNEHKIAIVDFKQQTFSLHEEDERNNLDNKINGMKNDAIFTMDLSVFCDKYAMEEILV
Ga0238435_1004564	F009143	GGA	MTKWDTIQADVKDAYVYIDEEEMYNKALEEGLIEFGSDEYDEDELSKSLTLDWNN
Ga0238435_1004568	F038205	AGGA	MAKVKQYLEIIAVACDECGGAGFLFYGDENNYDVESCDCALEIWGI