Scaffold Ga0238435_100215

Overview

Basic Information

• Taxon OID: 3300029349
• Scaffold ID: Ga0238435_100215
• Source Dataset Name: Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14384
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (23.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location

• Location Name: USA: Iron Gate Dam, Klamath Basin, California
• Coordinates
  • Lat. (^o): 41.93
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_10021511	F021297	AGG	MSDTVTLSQGNSFACTFVWTPGTTGPANLLATTLTSTVEDKCGNAYELTITKALDGLSFTCTYPGSTADWALGLGRWDIKFVFPGDTVSRTEVFRIQVIDSVTV
Ga0238435_10021518	F082694	N/A	MGTKSSRHIVEAAVATHLSDQVELAGVNIYKGDSADTNVLPKAIVLCDSARTPNDLPDGLGNYDCSVRVTLFDSADDVTLSDHRARVAAIAGAMQDLEALQAVFTLQGDAYCYDCSVLSEDEGVNERSWASVLVYDILVVVNPEG
Ga0238435_10021520	F085382	N/A	MSLYGSTFNSDFQSILADIGVPATVGANLFLVGLSQPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIASGVPAAFLAPGKKLTVNGQVLRVKGQSYKQASAVIELTCIDDNQ