Scaffold Ga0238435_100165

Overview

Basic Information

• Taxon OID: 3300029349
• Scaffold ID: Ga0238435_100165
• Source Dataset Name: Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16778
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location

• Location Name: USA: Iron Gate Dam, Klamath Basin, California
• Coordinates
  • Lat. (^o): 41.93
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004206	Metagenome / Metatranscriptome	448	Y
F027822	Metagenome	193	N
F051085	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_1001653	F004206	N/A	MAGQSLPAAFTYLGVISAITDYLLHKLPDSFKGWTREAVEDYVLFHAEQGTLKIATQDEQVVAVLVGWRQMGPEPKAWTWQASDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPESAILPAIGYRNGKLVTYKKGSMPIYKMAYKKHGNIS
Ga0238435_1001655	F051085	AGCAG	MNYGYPGAMPYGQSGGMTQFAPQMPSMQPGTGYGAQMQPMNPINTVSEIEQQRKRLKALGLDDTMIDDALSFKQGLFEKRDEMQGQAMEAIGGGLKAAGSGITGAASAAGAGLKGLASSL
Ga0238435_1001657	F027822	N/A	MNKLGQLYFDAAGGNHNAVVFITAFHAYCHAIDDLVDGDVPFTPEAFLDVMMQANSLYSTPFYIENWFRLQPVIAQITSTYADSVAWEKADEEWKRQTSDVLRLCGNDMIIQVAWIIGGYKHMRAISLKLREFAYHSQHA