Scaffold Ga0238435_100044

Overview

Basic Information

• Taxon OID: 3300029349
• Scaffold ID: Ga0238435_100044
• Source Dataset Name: Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37359
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (16.39%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location

• Location Name: USA: Iron Gate Dam, Klamath Basin, California
• Coordinates
  • Lat. (^o): 41.93
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008751	Metagenome / Metatranscriptome	328	Y
F029027	Metagenome / Metatranscriptome	189	Y
F038121	Metagenome / Metatranscriptome	166	N
F045624	Metagenome	152	Y
F091302	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_10004427	F029027	N/A	MTNPAFDYLRQFKKVSKETEELVIKFIKKKYPEIGVNELVKIFENGIAGEYGKVYAADPETILDWIKSHTKGKGQQRSYYETPMLTKDISIYDQRYPEKQEDWNKEVNKSYTCFLNGVSTLEMHQHIYDRLMVDNKIEMNSYLKYYSDCVEEAKQLVLKDYFNDCKKKGYSYIYFIK
Ga0238435_10004428	F045624	N/A	MTPTEQYKVFTEITNSSFIELSLTYARSYEKNPKGFINSYKRYNSIRLVCNWIVYTYKYIGAFEECKALGKDFTDWANRQEVDDKYKKGLAEFMLIIYSIIKK
Ga0238435_10004434	F038121	N/A	MRILLLSLFLLACNPVKQVLKDKQKLDKVAEYVISEGYCANDTIIQTKSDTLITYDTLYERNDIIRDFYHTDTLRVPLTKTLVKTIRIRDTIQSVVVDNARIKQLEAKLALQTEKTEEYKGKAKSRLNWLILLIGIMCLRLIFPYLKKLLLWHFSPMLK
Ga0238435_10004436	F008751	N/A	MTEVMMFIAGQAILILGGLIGIYVKVSLKLKELEIRVHVVEKQDDQISKKLDNIFNQLTHLTIQLQNKQDRE
Ga0238435_1000445	F091302	GGA	MLVNIILLNYERKQHTQRVKNVNFSNAGFNFDFIEVEMKGIARAINYGISRSYQYDAIVTMANDILMPENWLQRMVEAAYAIPNTGMCGIHCVEMLGERTYINDIPIHKADAVFGNVLIPMQAIEKIGKFNEVYDPYGMQDSDYSFRLKQTGHLNYYLGGLTAEHIGHDVGQDTPYRKMKDEGLSKCDKLWAQETAKYQATNNYVIL
Ga0238435_10004461	F091302	GGA	MLVNIILLNYERKQHTQRVKNVNFSNAGFNFDFIEVEMKGIARAINYGISRSDKYDAIVTMANDILMPENWLQRMVEAAYAIPNTGMCGIHCVEMLGERTYINDIPIHKADAVFGNVLIPMQAIEKIGKFNEVYDPYGMQDSDYSFRLKQTGHLNYYLGGLTAEHIGHDVGQDTPYRKMKDEGLSKCDKLWSQETAKYLKNNNYTIL