Scaffold Ga0238435_100041

Overview

Basic Information

• Taxon OID: 3300029349
• Scaffold ID: Ga0238435_100041
• Source Dataset Name: Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38701
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (73.28%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location

• Location Name: USA: Iron Gate Dam, Klamath Basin, California
• Coordinates
  • Lat. (^o): 41.93
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F007110	Metagenome / Metatranscriptome	357	Y
F008812	Metagenome / Metatranscriptome	327	Y
F035281	Metagenome / Metatranscriptome	172	Y
F036210	Metagenome / Metatranscriptome	170	Y
F041150	Metagenome / Metatranscriptome	160	Y
F054798	Metagenome / Metatranscriptome	139	N
F056376	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_100041111	F008812	AGGAG	MIQWIGVIIALLGLAYNGVKDYQKGDIKIPQLPQKQVLTKPVYPVQYCLMAYDPNVNKVFYLHENGQWHDYAPQQRRYSTTQEVRQDQGQGQATLGNSYGTQGASGYYYGQQAQAAANTTRR
Ga0238435_100041115	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLDNGCYAEQTEKQYKNARTAGFANVITEKHKIRAMILDAKRREKSIRWHERGDWFLNGELDLEYVANVTWACESILADGDTLPNMWFYTHIYDSRLVSLEKYMAVYASVHDDNDMNEAKSKGFKLFAWCDSDMKIAPKRPKHKAKADLWRQALPKLVVLNAAKFVVCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH
Ga0238435_1000414	F007110	AGGAG	MLCRYCQSMIDSDRLEFLQDYNRPLVCKECSTEQRAVGFMDWGHKTAPSLVMVPANANETIRILNRANRRAR
Ga0238435_10004172	F054798	N/A	MIYLYLNETEKLAEIVSELVKLGMGVVAELHGNKWHIEVTK
Ga0238435_10004173	F041150	GGAGG	MGMGSFAVGSFVIEYKDLKEICPNEIKSIEQAKYFRDVGWNAIGRWLAWDDPDNIKEELYIAVEEDKSQPTIRLEKDIDSIVEDIFQEYEKLITALKNSFNKKTKLTLYFDSYDEEGGDRYDNPGDKDGCIFCVDGMVQLTPAGKKFKDIITERKWTQFG
Ga0238435_10004177	F056376	AGG	MNLIKCFSNVIGHKEAQELVIDLNQMKSAKSEDFYIEYDKSKDYYQDDTYIVVGNVTANDWDELNLDMDFMQVDLI
Ga0238435_10004193	F035281	AGGAG	MKNFVIAAMIVLGMVGSSYGGECVNGSCLLRSRVVNVTREVVSVPVTVTRRTVEATRNVGRKTVNRVRNIVR
Ga0238435_10004195	F036210	GAGG	MKTRYLNARNRPEIQRKYIDHILGTLDFMQIKDRLRDYFELEKDKESNASLEAEIRQEAPEVLVDNWEDLDEPSTLTKKEEFHHA