NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0238435_100038

Scaffold Ga0238435_100038


Overview

Basic Information
Taxon OID3300029349 Open in IMG/M
Scaffold IDGa0238435_100038 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39750
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (82.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location
Location NameUSA: Iron Gate Dam, Klamath Basin, California
CoordinatesLat. (o)41.93Long. (o)-122.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F012108Metagenome / Metatranscriptome283Y
F043359Metagenome / Metatranscriptome156Y
F064189Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0238435_10003853F043359GGAMEWNNSHKRPPYVGQKVYYFGENIGIGIGHYSYEERTMIPYTYNDKNEKEYTDKEIKLCPHIFTNVSWGVVDACDAPYWLPYDEERAKSWCPIIPEQYTKGLYD
Ga0238435_10003854F064189AGGAMAKNFKDLHTVDAKDMTRDQAMVYIINFFNSRMATMSNAHRNKVKELIGLHEIDTTELVNKYLELVLENS
Ga0238435_10003856F012108AGGAMINLQLSVREAMNLATNCNLEIYERIVTAFEVALGVNQLRVVTITGGMTLDNRIPCIKAIRLHTGWGLKEAKEWTDFMVGGWKYDKFVPASVGARQSITLKTPEAAENLLRDLAGLGCEGFLS
Ga0238435_10003857F006543GGAGMKKFSFAVDIVADALDRDTVVESIRECLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHNAKVEAEATA
Ga0238435_10003860F000325AGGAGMMKTANGNDKLGKENCIVVSRPVGDTCPPDCDFLGNGCYAEDLENIYPGVRPAGMQNLITEKNRIRAMLVDAVKKNKDVRWHERGDFFKDGQLDNEYVDNVLWACESILASGGSLPTMWAYTHIYDTRLSVELGKYINMYASIHDGEDMKQAKAAGFKHFAWCDSDTKIAPKRPRGKAKAAAWRASLPKLIVLEGEKFITCPEIRRGRGVVTCTKSKNSVHCDLCPRGLANVLFPAH
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