Scaffold Ga0238435_100007

Overview

Basic Information

• Taxon OID: 3300029349
• Scaffold ID: Ga0238435_100007
• Source Dataset Name: Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 161086
• Total Scaffold Genes: 157
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 115 (73.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location

• Location Name: USA: Iron Gate Dam, Klamath Basin, California
• Coordinates
  • Lat. (^o): 41.93
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009680	Metagenome / Metatranscriptome	314	Y
F086677	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_100007134	F086677	N/A	MDNTYLIDYSGWFDEGGYCQVYPIKENPLFVFKEFRSKSKATESRRLQNKLAKHDLAPQIYTNVCRIEFCEEDGWKPNEPSDWGYITERAYPVNHNDKTMKDIQYLVEDIEDKTGLKFWDCHWYNVGLVSRGRSRKLVCIDTGKESFSGISNAWGFSAPGPKCNYCNRYQCKCSEE
Ga0238435_10000785	F009680	AGGAG	MTDTIIHFWENLATTAIGIIVTMLGFWVTIGRNMATKAEVLHMIETQSPYVHDRQFIMERLNSNKETQAAFASALQRNTEVMNELKVQIAMLGKTLEALEDRIEK