NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0243736_1000631

Scaffold Ga0243736_1000631


Overview

Basic Information
Taxon OID3300029341 Open in IMG/M
Scaffold IDGa0243736_1000631 Open in IMG/M
Source Dataset NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_29_stool_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43998
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073574Metagenome120N
F074898Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0243736_100063127F074898AGGAGMRKILSLLLMLALFLPCALAETPQGIDLALTSTYGDGLSLWMTAGLGETPFCSLTLPSGQINLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHHLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDEDFQLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDTLGTIELTQLLDDLF
Ga0243736_100063131F073574AGGAGGMLLPAAVRPYAADVDGTASRVRCAIVLNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDDDVPLFYSRCDGYANVLDGKQPPAPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPSDAFTWVWVTMRCTRCHAVFRGNFTAD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.