Scaffold Ga0243736

Basic Information
Taxon OID	3300029341 Open in IMG/M
Scaffold ID	Ga0243736_1000195 Open in IMG/M
Source Dataset Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_29_stool_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029341 Open in IMG/M

Scaffold ID

Ga0243736_1000195 Open in IMG/M

Source Dataset Name

Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_29_stool_2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Institute for Genome Sciences, University of Maryland School of Medicine

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	106899
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	78 (89.66%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

106899

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

78 (89.66%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location Name	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Baltimore

Coordinates

Lat. (^o)

39.28846264

Long. (^o)

-76.62594594

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F045105	Metagenome	153	N
F056623	Metagenome	137	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0243736_100019537	F045105	AGGAGG	MSDKLKRVLDTNLAGLHVTDAPVNAVLRRVSQDEQRPRVIRWQAIAAVLLVLILGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMAQVEKDGGCSLSTLLEILCPVGSSLGQWDIRAQVALSQTLERIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFTNLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSDHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALNREEAIDAALAIQGGSSSDVLAAEYLAGASGDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASDAIQRQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFSKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGYLPPIYQRETVQQLQALLTGSQTDEAGLRQMETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLLDVRDSDLSVVGSVQIPSFSALRASILLPVRVWNTLAENLRVTSFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLCQTIYPDVPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRLMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV
Ga0243736_10001959	F056623	AGG	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPAAQKRDWKPLIFPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADEPELRRRLVEVEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0243736_1000195

Overview

Ecosystem & Geography

Associated Families

Sequences