Scaffold Ga0243736_1000090

Overview

Basic Information

• Taxon OID: 3300029341
• Scaffold ID: Ga0243736_1000090
• Source Dataset Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_29_stool_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 158711
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 126 (88.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location

• Location Name: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041208	Metagenome	160	N
F078003	Metagenome	117	N
F101193	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0243736_100009010	F078003	AGGAGG	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDASGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVRQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ
Ga0243736_100009058	F041208	GGAGG	MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVMLDGTPYRFTMRLDMMAFTSVENVNLHPTAAQTQRDILLLMRDNLAEKGVDIAQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLSGMAYTAFAINKAEKGYDAFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFAIPQRDMADDAYEVEVDDKDGKVTGMWGPQDGNG
Ga0243736_100009064	F101193	GGA	MARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCIFFRNSMNDAIGWFAAWLLLMLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH