Scaffold Ga0183748_1136736

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1136736
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 504
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F002883	Metagenome / Metatranscriptome	523	Y
F014748	Metagenome / Metatranscriptome	260	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_11367361	F001419	GGAGG	MYEFDGYDEILKCYEGVTDQHASTSFEVGLMNDLYYQLFYNYDS
Ga0183748_11367362	F014748	AGGAG	VNIGDRVQTLHTLTPITGEIVDMYKNLVTIADDDAETTDDLLSFHASELEVI
Ga0183748_11367363	F002883	N/A	KQGLKTMSTLHHEDMLLQIFDEVCEAFPYLDEEKQIEIANNRFQELCQ