NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1062048

Scaffold Ga0183748_1062048


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1062048 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1000
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008049Metagenome340Y
F010274Metagenome / Metatranscriptome306Y
F016455Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_10620481F016455GAGGMSKNNESEIMARWHTYSEMGGSADFEVFYAHSVENQKLLVRVAKGKALLRGSL
Ga0183748_10620482F010274GAGGMNKRISEILNTLERMVEDLYEVGNQDAQYYEEIVGETMDIVQEYDL
Ga0183748_10620484F008049AGGMSQHNHLTWADFLLCIGMELAFYKNGERPEQEQMIAEKMMEIGVW

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