Scaffold Ga0183748_1056112

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1056112
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1084
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049045	Metagenome / Metatranscriptome	147	Y
F060048	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10561121	F060048	AGGAGG	MHYGNFGLEKNVETLSNHYVERFKFLLEGEMLNLQVKRHKDANSIKQEYICNGEVEDDNYQWLYVNYQFEEAN
Ga0183748_10561122	F049045	AGGAGG	MTVLELKEYLSKFNDDEKITFYFLKDNVLTNCQLEDVNSYGMGIEFTIQDTSEYFEEAV
Ga0183748_10561124	F049045	GGAGG	MTVSELKEYLSKFNDDEKITFYFLKNDTLTNCQVEDINSYGMGIEFTIQDTSELFEEAS