Scaffold Ga0183748_1034065

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1034065
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002445	Metagenome	558	Y
F010922	Metagenome / Metatranscriptome	297	Y
F025008	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10340652	F025008	AGGA	MTKYILIMKICSVLHGECMPEYNAGEHATWYDCAANGTLMTASALSEMGPDLVNSNKIYVTFKCRPIVGA
Ga0183748_10340654	F010922	GAGG	MAKYRAPLANSDVIHLIEQNKEPEQKLWIAVLAKAFDDAFYTTDQTAALEALSWIKHGSDFNYVCGLAGRDPNYVRKRMLDKVIAREASILMEHKRIKQGVDNIIKLKKKGPVPGTQKKEKVYDYSWLPKQTHDYVDR
Ga0183748_10340655	F002445	GAG	MTIVGCQSRRMIMSTGKPKICPECKGNGYLRTEMNTIVQCLTCWSEGEIDEKIWARNYDPIIPDELQSTQKE