Scaffold Ga0183748_1027291

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1027291
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1903
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066694	Metagenome	126	Y
F070308	Metagenome	123	Y
F084111	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10272914	F066694	AGG	VKADLGIRXXXAGDLVKHNSYKDLLGIVVEVNLNYAGTPVAVAWTGRNPYGFGKNSIHHPDRLEVIREGR
Ga0183748_10272915	F070308	GGAGG	LKVGNLVKRRDPPWGTVDQLGLVIDMETVEQAVYNPKVAKVQWLGGEYPPFMYKPDSLIVVSEA
Ga0183748_10272916	F084111	GAG	MRHDWDPNDQQNWERNCEAERKARPLRDYNGDILNTGDLVWLTDYRPMRLAIVLGESHRENVLVRPVDGGYDFTINEIGCEKVKKNETIL