Scaffold Ga0183748_1026273

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1026273
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1956
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008236	Metagenome / Metatranscriptome	336	Y
F019643	Metagenome / Metatranscriptome	228	Y
F065685	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10262732	F065685	AGGAG	MKPVIGIGSNTKYGRVLKILRDGVVVENGRGEKDTVSFRKIEKSLKGN
Ga0183748_10262736	F019643	GGAGG	MAKYYISTGTLGVIFSTDMEPYDACRRVIHECTPDDEVDEYMYCDERGYRDYTTADTTTYVIDTEQILRKEGYIR
Ga0183748_10262738	F008236	N/A	KYITMYASVHNHDDVAKAKAAGFELFAWCDSDEKIAPKRPRGKKKADQWRSDLPKLIVLGEDRYITCPEIRRGRGVVTCTKTKNSVNCQLCVQGLANVLFPSH