Scaffold Ga0183748_1023468

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1023468
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2130
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F005611	Metagenome	395	Y
F026151	Metagenome	199	Y
F088731	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_102346810	F026151	N/A	MTNKKNLPTQDNIKEIMQQTLKNILSCVGGVYYNKYKLKLERKKDGKRNKN
Ga0183748_10234682	F005611	N/A	MKNDRKDNMKKYKVLAGETIYVEYMTEIEANNKKEAEKIALDTCASDWKSTDWSNSAGDFIIEDIEEIKD
Ga0183748_10234684	F088731	AGG	MIKLKLISTSGDMHTGGLSNKPTIIDIDYKYKKSVDAFLKYQNIFHNAAFDKSFPNKTSQKAYKKYVKSFNKLKEVGIFDCKWEFRTGWKYKD
Ga0183748_10234689	F002768	N/A	MEKETKTSWWTLTIEDYPNYKPNDIDLEHIAECIKQGYDNGQLIQESEEE