Scaffold Ga0183748_1017298

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1017298
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2675
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011493	Metagenome	290	N
F047106	Metagenome	150	Y
F048246	Metagenome	148	Y
F072847	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10172981	F047106	N/A	HATAGSQSYILVNLPLAEQVKLFHGCKTKELGEKTVFQVPGIYEGPLKDLDFVKLLSNSQTPHT
Ga0183748_10172983	F048246	GGAG	MVLPEDSSNPIVEVLKEISDSLDRNTEILNKIANHYDSVVPVMKRNAEAIEESREDNRSPLDKMYEKVFNN
Ga0183748_10172985	F011493	GGGGG	MPNDIVKTQSINNVDVTPLLKEVLEYSKDQASVGNLEQLISKVPMKESMDWKLISGVLCNAVIEWVAQDKDSRVDLIHHLQGEVGYILKRLGLTM
Ga0183748_10172986	F072847	AGGA	MTKSDFKTRVGNGFFSCKWINNKGDVSRIKRGILGVNAWRHTELGTRESIQEPRNYVLVYRVGNGLNPNHRRWANVNPETVFEINGGRI