Scaffold Ga0183748_1016286

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1016286
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2803
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10162863	F029713	GAGG	MTSDKYDYEKELKAAKRAEIERIWFAQEATNKELLDAYKALEVKDNKKPS
Ga0183748_10162864	F036656	N/A	MKLCTNQSIPCEFLKGACIFLSDEDEGRYIKDVCVDLEKHSIILIDDNGNGMYWESLRNASIQFQGGR
Ga0183748_10162866	F033766	GGAG	MSDYPYNLTAIATHLRELAKSIAKKLDISEQDAWDLCIEKLESKYLHMTREEEL