Scaffold Ga0183748_1014629

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1014629
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3038
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F059941	Metagenome	133	Y
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_101462910	F098215	N/A	MNNYNGAEFTYGIGDLVEFTAKWATEDYITETKVTGIIIRERFVFTADNKFLVRTPKKDYWVPRPSLTLLSRAENKT
Ga0183748_10146294	F006383	GGAGG	VLDSADKMWAVQQPGTILRCRWSNNYGKLALVLARAYDGPKPSNGYPPRQYVKMQWVSTGERFEEMLVNAHNCFDIVSSCGKVDAKETL
Ga0183748_10146297	F015346	GAGG	MNPEWTQYRVGDLVFAGTSKVPGLVTKSNYWALDEYLGGEIECIDVMFGGHESKQYPVQYLEAMP
Ga0183748_10146298	F059941	AGAAGG	MKLGTLVQFAAYGAVMDTGYVSRYDEEDPEFMWVECVKMGPQRVRKDHTLLEVVSEAG
Ga0183748_10146299	F006867	GGAG	MLQGRELAKEIQKRSRIQPGMLVKSSGGSPVIKIALVVGLSAGCKFSQDYQGAEEHIFYKCEPLDGSPSFVDYVCNMEKVS