Scaffold Ga0183748_1013401

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1013401
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3237
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029745	Metagenome	187	Y
F040056	Metagenome / Metatranscriptome	162	Y
F073529	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10134014	F073529	GGAG	VKAGDLVILRTGRYNFASNAKARWEWEEVMGIVTDDRGFVDGTAEYRVYTVDGKHTWSHIDDLRLVEKP
Ga0183748_10134017	F029745	GAGG	VRRKCPKVGDVVKSRYSSDPAAGYIVGKEGIHVWVRFFDDAAKGESWDVYTRRDTLEVISSGRSN
Ga0183748_10134018	F040056	GGAGG	VAALTNFRIGTLVRWKAGKSGEPDDVDELGIVTRLPGENWGDNYHIVWSINSCTSHHSPDMIEEALFCGQMEVISSG