Scaffold Ga0183748_1012854

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1012854
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3335
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F005670	Metagenome / Metatranscriptome	393	Y
F018197	Metagenome	236	Y
F105361	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10128541	F105361	GAGG	MNKSINERELNASQFERLKELYVETIVDSMSYEDLLDYVKTDYYNSLDKYNEFDLFEDIKYTLDEEFLDEFIKQIKGKITD
Ga0183748_10128542	F018197	N/A	MNTQLPKETNIKEWTNLPPISEELYAELVKEFNNERKYFFNDSYTLED
Ga0183748_10128543	F005670	N/A	MQLLTRQEYNLILRSLDKYDLYMTKRDKEIRENLEDKLYYNLYNPKDGVAQTNVDLSHLYNIKTEKDLSIDDEIKELDFTS
Ga0183748_10128547	F001993	N/A	MGLLTMNAEQLRYKMKNLDSLLPNRSVCNDEQLHELYSKLRDLIEFTDYKIDIVDLYTMLHCAMEDFEMYE