Scaffold Ga0183748_1012168

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1012168
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3482
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021440	Metagenome / Metatranscriptome	219	Y
F040579	Metagenome	161	N
F043885	Metagenome	155	Y
F056531	Metagenome	137	Y
F058923	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10121681	F043885	AGAAG	MNIIFKSGDYVSLPMTENLFWNRVSNLRNAMLTAENFEFRLLYFHKLQELMRFVP
Ga0183748_10121682	F021440	AGGAG	MKNKPTHFAVEDIKFYAMDEDNEIIVDEKGEQITYRLKDDVRFKPLEYLCEGMDIDLFEEVK
Ga0183748_10121683	F058923	AGGA	MSITFVYRDENNKVQVKKIEYEEVKKDLMKYLSHDIRSIIKEKEEDEK
Ga0183748_10121685	F056531	AGGA	MRPISRFTKKFLFNTKVREGDFDWHLYDMSYELSDEEEALIQLNGLIESIITGNDTYSFENFKADVEQAQREVEEL
Ga0183748_10121688	F040579	GGAGG	MTDEQLEQKASDLMNVFFEFMCDSDLEKYIDDNASLTESGEYLLAVIKKWLKDNVIEVEWEGEKSRLWTPWTKR