Scaffold Ga0183748

Basic Information
Taxon OID	3300029319 Open in IMG/M
Scaffold ID	Ga0183748_1009554 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029319 Open in IMG/M

Scaffold ID

Ga0183748_1009554 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4119
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4119

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Red Sea: TARA_032
Coordinates	Lat. (^o)	23.36	Long. (^o)	37.2183	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Red Sea: TARA_032

Coordinates

Lat. (^o)

23.36

Long. (^o)

37.2183

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F031481	Metagenome	182	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100955410	F063682	GGAGG	VKPGDLVRIRKTSIDHLSANWFIWHAEHKTPLVLIEELNKSYWKVLKPDGNTVHIHKTHLTTRMY
Ga0183748_100955411	F059941	AGAAGG	VKLGTLVQFAANGTVMDTGYVSRYDEEDPEYMWVECVKMGPQRVHKDNTLMEVVSEAG
Ga0183748_100955412	F006867	GGAG	MLQGRELAKEIQKRSRIQPGMLVKSSGGSPVVKIALVVGLSAGCKFSQDYQGAEEHIFYKCEPLDGSPSFVDYVCNMEKVS
Ga0183748_100955413	F098215	N/A	MKADFTYNIGDLVSFKSRRVNEDYVSVDVLTGVVIKQRYVFTADNNFLVRTPEKDYWVSRPALTLLSKAENKS
Ga0183748_100955416	F031481	GGAG	MKVGDLVKRHEGWQGWKRQQLGLVINVDRAVVKVQWSGDYGTFSHPITSLEVLNERG
Ga0183748_10095546	F006383	GGAGG	MLNSRDKMWAVQQPGTILRSRWGNENYGKLALVLARSYPGPKPSNGYPPRRYVKMQWITSGERFEEMLVNAHNCFDIVSSCDTLTTEEKK
Ga0183748_10095549	F015346	GAGG	MNPEWTQYRVGDLVFAGTSRVPGLVTKSNYWALDEYLGGEIECIDVMFGGHESKQYPVQYLEAMP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183748_1009554

Overview

Ecosystem & Geography

Associated Families

Sequences