Scaffold Ga0183748_1009174

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1009174
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4236
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019662	Metagenome	228	Y
F041434	Metagenome	160	Y
F051541	Metagenome	144	N
F076167	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100917411	F076167	AGGAG	MESQKNYLIKVFGLGYRGQYRLPLFGKVDIDRINDEAIHLIITKKMILERDKFYSHNVRITYEEL
Ga0183748_10091744	F041434	GAGG	MKINNKEVIKFTKDDIKSVTLDSHRYDTWATITLKTGVEIRSHSSELNQLILNKYKSYIAFGAITHTWLSMNNGEDFKV
Ga0183748_10091745	F051541	GAG	MKPTMNYELEQKKELNPFKELAKAVITRACLDSLGHITNSSYCGLTEKSILMDTAKRFFDPNIKSFRLWCDLAGGEPEYIKDLHNDLTYHYNRGRLKNLNTRVVIETLLKKL
Ga0183748_10091748	F019662	AGGAG	MTEQEQKDFEWASSYYLYDDLDADWVNWNEEKLHNELENLAWQPFEHWQGKDIYIEIEKLADGVRQYINKENK