Scaffold Ga0183748_1008927

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1008927
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4315
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004764	Metagenome / Metatranscriptome	424	Y
F014388	Metagenome / Metatranscriptome	263	N
F049045	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100892711	F004764	AGGAGG	MNYTNFGLEKNVEILSAHHVERFTQLRENEQYQDADAIAQEYICKGEVEDDNYQWLYVNYQFEEAN
Ga0183748_100892712	F049045	GGAG	MTVSELIETLLDYDGDEKITFYYLKDNVLTNCQIEDVNSYGMGIEFTIQDTSEYFEEAA
Ga0183748_10089275	F001993	N/A	MGLLSLTSEELRYKMKHLGVLCPXXXXRSVANDEQFYELYSKFKDVIEQTEYNIDIVDCLTALHCAMEDFEMYE
Ga0183748_10089276	F014388	GGAG	MSSLHHENILEDCFEIAMESFRINNQLTHEQLDELITISKGTYDAICSNAYKLFQDRCI