NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1007727

Scaffold Ga0183748_1007727


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1007727 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4778
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F001479Metagenome / Metatranscriptome687Y
F007756Metagenome / Metatranscriptome345Y
F013897Metagenome / Metatranscriptome267Y
F025518Metagenome / Metatranscriptome201Y
F082819Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_100772710F082819GAGGMSYTKNEVALETFISNVNSFFYYVGEDDDLIPFPRYEIRERLDKYVSQFMQSIEVEGDDD
Ga0183748_100772712F025518GGAGMSDKLFHNSKTSLREESKLYLPTVKEFYPHLDDMLTDRIAKYCAVYSKGTDKASIRQAINDFEEVFDTELTSS
Ga0183748_10077273F007756AGGAGGMTKLNTVKRFYINVKFEKYGTYTFEARSKEHALEMYKDGDYGWSDYTEDFGEFNEVVEDVEEEVFADTQLSLSGVF
Ga0183748_10077276F001479AGGAGMSKEMLFLCDVYDAWLDENDLPHRSADDILYGQNAMALTSNQKYWLESFIATWEVIAEHC
Ga0183748_10077278F001026AGGAGMALHKLELDDLELTALMTHLQGQSEIMCESRLNSDSNPRELPDREEILLNMVYANVFTLAYEADKNPKVDYNIIENQDRIYKYS
Ga0183748_10077279F013897N/AMNLTKDQLIELMNTIDYATDNRYDYEKYTIIRSGTFDLEPIRDMLYNEYITKRGNS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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