Scaffold Ga0183748_1007685

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1007685
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4793
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F016409	Metagenome	247	Y
F027561	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10076852	F027561	AGGA	MGMKHTKEYYDDLITQYVNGKAKIKGEHPEEIIKAIDTFFHAGKMLVDHPEIQAIPSEYVTQLLETLAKYPQYYDLLMDLIKILNMEIKDER
Ga0183748_10076854	F016409	AGG	MQNANKLGYYLWKRINQDQDNYRKTRPPNIRGLYFNVKDLNDYIREYFDYGMDWDDTSKEEILDPRYWDERDVDV
Ga0183748_10076855	F012123	N/A	MTKRNPCRVMKIEYNENGVIEVERRGYAQERKTIDGVEMTFVMEGGDSGIGLWYPSHEVIMTKGKWTNAKRQ