Scaffold Ga0183748_1006956

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1006956
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5104
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F012353	Metagenome / Metatranscriptome	281	N
F029472	Metagenome / Metatranscriptome	188	N
F033077	Metagenome / Metatranscriptome	178	Y
F049702	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100695613	F005533	AGG	MSYTHNETQLLTLISNINNQFYYIGEEDDKVAPIDVKKFTEYCVAFIDSLEIEQ
Ga0183748_10069562	F033077	N/A	MTTPKPDDTTYKVLRLTTEGYTEVDNINAVKLTKAQCDQVIQNLIADGVNPREIRAVKDN
Ga0183748_100695620	F012353	N/A	DWKVDPNKDVTFPLVDWIVKLFPVIKDKEIEINQVDLDGEFAMGFCQDNDGEFLIHVHNGLDIKEYVKTLIHEFTHVRQTVDGITDSNAREDEAYYLEEQLSKAFWDNNIXXXXPKLTKLSTT
Ga0183748_10069563	F029472	N/A	MLSRQTIENLSDKLMVGVANYVTEDPRFTELLNELVPEAIDLELGQVDDYSVVQIITAIQQHLRCSPNHSQVHYPRCPL
Ga0183748_10069568	F049702	GGAG	MTLIDFNKKELHDIYSALSYTRLETGFENESEAELYDRLTKLMDKVAKLRQVCDCQEK