Scaffold Ga0183748_1006649

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1006649
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5273
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023877	Metagenome / Metatranscriptome	208	Y
F025520	Metagenome	201	Y
F036270	Metagenome	170	Y
F062820	Metagenome / Metatranscriptome	130	N
F080142	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100664910	F036270	GGAGG	MYIESTDKQGVFKGDEQGHKLLSLIDDMGWDFDRFSSSGQETYDKICAILATVKEVKDGTTK
Ga0183748_100664912	F062820	AGGAG	MTTSTWKHIDIGSICVHCGKDTAFGHSDMLFVDRIPADADLLDDDGKPIGVRKGYACRECIYVDEDDFFHEDNISD
Ga0183748_100664918	F023877	GGA	MTIKQLIKEYVDDHYKHFGFYPYEVEVDGQIYSYGTYWEILEDRRFD
Ga0183748_100664919	F025520	N/A	MSFEEKFYVINSTSYIAEVKQTLCNEFLKELKNDDDTLKPHVSDLNTNFTYCGKPAIKCILPTCFIEIEYKTSDGHYLITREVFLYEEAYPTLKDLEAYKEKVSYGFASQVTQEIKDIVEAFHMGYGCECLSSGDY
Ga0183748_10066498	F080142	GGAG	MMKVGAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEFRNEVWSYNDALQKIKNLVQQVEA