NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1005022

Scaffold Ga0183748_1005022


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1005022 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6401
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012584Metagenome279Y
F016820Metagenome244Y
F036270Metagenome170Y
F037769Metagenome167N
F058913Metagenome134Y
F080142Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_10050221F016820N/AMIKKEFSYIVFSNSGENVQEIHGVYKDLEGATYGARSALSTLFPKHGDEAKIIRCEIISTEEAKKQCEDSKPKDLFEKADCEDGYCPLPTQQ
Ga0183748_100502217F080142AGGAGGMKVRAGEFIKTDSGEVIWGSEAFIDEVFKTLYGNDFRNEVWSYNDALQKIKNLVQQQEEN
Ga0183748_10050222F012584N/AMKLRPYLPENTFILSEDSLPKENHTDRFGKIMVFRKDVGWSVIPLTDAVQFLAMKHTHWTFTPDTPYD
Ga0183748_100502220F058913AGGAGGMELSKEQAIWLADKWSDFYYYFDVESMFEKDQQIYQDIGKNLSEVKQ
Ga0183748_100502221F036270GGAGGMYIESTDKQAVFKGDEAGHKLLQLIDDMGWDYDRFSSSGQETYDKICTILATVKEVEDGT
Ga0183748_10050223F037769GAGGMNYVQTQTDKEDEKLLKKLLSEKIPEKDAKKIINNVFSDLIKWTYEDVVLHLTQVFNFTEQESNQLIKDYDIISFATTKEVIMNPAPNFNATAPNDVKDYSANLWQARKCLSDANKLINATALTPKDYPNQSDFQDAALHRLHLQEHFVSINKYIDEHLDFAKHYIPPQTP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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