Scaffold Ga0183748_1004234

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1004234
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7173
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014155	Metagenome / Metatranscriptome	265	Y
F020709	Metagenome / Metatranscriptome	222	Y
F030784	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10042342	F030784	GGAGG	MFNTYIEDKAMIPVLLGYDWQISHGTWTDCPYETYVYLKKRVIHNGNAKELC
Ga0183748_10042346	F014155	AGGAG	MNHQRFKFYHHSTEYYRQLYNSIKQLEDNCKDINYTVLPSTINYKRKSKFIKSNSNTNKMHKKV
Ga0183748_10042347	F020709	AGGAG	MTDIKTQAKTAFGRTLHYVTDPVYADALQRLTGKKTLNDLDIINLNMLGLTVNGVNSLDQLELAV